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Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition

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Caroline Belser
  • Function : Correspondent author
  • PersonId : 1107166

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Julie Poulain
  • Function : relator_co_first_author
Emmanuel Boss
  • Function : Author
  • PersonId : 1085239
Chris Bowler
  • Function : Author
  • PersonId : 860770
Colomban de Vargas
  • Function : Author
  • PersonId : 1051366
Stéphanie Reynaud
  • Function : Author
  • PersonId : 1121589
Didier Zoccola
  • Function : Author
  • PersonId : 855074

Abstract

Coral reef science is a fast-growing field propelled by the need to better understand coral health and resilience to devise strategies to slow reef loss resulting from environmental stresses. Key to coral resilience are the symbiotic interactions established within a complex holobiont, i.e. the multipartite assemblages comprising the host coral organism, endosymbiotic dinoflagellates, bacteria, archaea, fungi, and viruses. Tara Pacific is an ambitious project built upon the experience of previous Tara Oceans expeditions, and leveraging state-of-the-art sequencing technologies and analyses to dissect the biodiversity and biocomplexity of the coral holobiont screened across most archipelagos spread throughout the entire Pacific Ocean. Here we detail the Tara Pacific workflow for multi-omics data generation, from sample handling to nucleotide sequence data generation and deposition. This unique multidimensional framework also includes a large amount of concomitant metadata collected side-by-side that provide new assessments of coral reef biodiversity including micro-biodiversity and shape future investigations of coral reef dynamics and their fate in the Anthropocene.
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Dates and versions

cea-03713370 , version 1 (05-07-2022)
cea-03713370 , version 2 (12-07-2022)

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Caroline Belser, Julie Poulain, Karine Labadie, Frederick Gavory, Adriana Alberti, et al.. Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition. 2022. ⟨cea-03713370v2⟩
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