Viro-fluidics: Real-time analysis of virus production kinetics at the singlecell level

Joëlle Eid (1) , Marius Socol (1) , Antoine Naillon (2) , Jérôme Feuillard (1) , Luca Ciandrini (1) , Emmanuel Margeat (3) , Benoit Charlot (4) , Marylène Mougel (1)

1 IRIM - Institut de Recherche en Infectiologie de Montpellier
2 3SR - Laboratoire sols, solides, structures - risques [Grenoble]
3 CBS - Centre de Biologie Structurale [Montpellier]
4 IES - Institut d’Electronique et des Systèmes

Real-time visualization and quantification of viruses released by a cell are crucial to further decipher infection processes. Kinetics studies at the single-cell level will circumvent the limitations of bulk assays with asynchronous virus replication. We have implemented a "viro-fluidic" method, which combines microfluidics and virology at single-cell and single-virus resolutions. As an experimental model, we used standard cell lines producing fluorescent HIV-like particles (VLPs). First, to scale the strategy to the single-cell level, we validated a sensitive flow virometry system to detect VLPs in low concentration samples (≥ 10 4 VLPs/mL). Then, this system was coupled to a single-cell trapping device to monitor in real-time the VLPs released, one at a time, from single cells under cell culture conditions. Our results revealed an average production rate of 50 VLPs/h/cell similar to the rate estimated for the same cells grown in population. Thus, the virus-producing capacities of the trapped cells were preserved and its real-time monitoring was accurate. Moreover, single-cell analysis revealed a release of VLPs with stochastic bursts with typical-time intervals of few minutes, revealing the existence of limiting step(s) in the virus biogenesis process. Our tools can be applied to other pathogens or to extracellular vesicles to elucidate the dissemination mechanisms of these biological nanoparticles. WHY IT MATTERS We are frequently exposed to viruses, but some of them, like HIV, cause fatal diseases and pandemics. We have developed a simple viro-fluidic system that requires only fluorescent labeling of viral particles and allows direct observation of viruses exiting a cell, one by one, under cell culture conditions. The system operates in real-time and at single cell and single viral particle resolutions. Our results reveal HIV production at a moderate frequency which was not predicted for optimal virus dissemination. Importantly, the viro-fluidic tool is remarkably easy for biologists to access and is transposable to other pathogens or extracellular vesicles.

Domaines: Virologie; Biophysique; Biotechnologies; Micro et nanotechnologies/Microélectronique

Joëlle Eid, Marius Socol, Antoine Naillon, Jérôme Feuillard, Luca Ciandrini, et al.. Viro-fluidics: Real-time analysis of virus production kinetics at the singlecell level. Biophysical Reports, 2022, 2 (3), pp.100068. ⟨10.1016/j.bpr.2022.100068⟩. ⟨hal-03751935v2⟩